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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89426368_89431103_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89426368 - 89431103
Intron Length:
4736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGATTAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
AVELAALCLQAELGECEHPE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.1
0.54
1
66.7
42.9
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926