About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89431157_89431905_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89431157 - 89431905
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
LQLRQDILSGKLKCPYETAV
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926