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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89431951_89434969_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89431951 - 89434969
Intron Length:
3019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTCAATT
Flanking Amino Acid:
EPNNLHEEFTRYLFVLQLRQ
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84
0.77
0.9
84.8
35.4
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
60.7
0.41
1.5
73.56
38.2

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926