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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89435049_89437130_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89435049 - 89437130
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCGTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTTAAAA
Flanking Amino Acid:
HSKFIKKQIKIGPPYTLHFR
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.7
0.49
1
64.8
40.5
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
62.5
0.39
1.4
69.31
37

Associated Gene:

Gene:
EPB41L4B
Ensembl Gene ID:
ENSAPLG00000011064
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043334
89417262 - 89500924
83663
ENSAPLT00000026693
89338999 - 89500924
161926
ENSAPLT00000018345
89417891 - 89455349
37459
ENSAPLT00000011539
89338999 - 89500924
161926