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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89505274_89524678_R

Intron Information:

Intron Rank:
134116
Intron Class:
major
Intron Phase:
Intron Coordinates:
89505274 - 89524678
Intron Length:
19405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TAACCTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82
0.72
0.8
74.4
40.4
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
61.5
0.44
1.6
75.6
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031463
89504942 - 89537285
32344