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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8952106_8953342_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8952106 - 8953342
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGATTTTAATT
Flanking Amino Acid:
DDLKSFTNYSGGYTADHPVI
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.9
74.1
39.5
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
64.9
0.55
1.2
74.15
37.3

Associated Gene:

Gene:
UBE3C
Ensembl Gene ID:
ENSAPLG00000005692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006021
8884858 - 8958906
74049