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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89535040_89537877_R

Intron Information:

Intron Rank:
134115
Intron Class:
major
Intron Phase:
Intron Coordinates:
89535040 - 89537877
Intron Length:
2838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCCT
5'SS Class:
major
3'SS Sequence:
ATATCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ACATCAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
70.4
39.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.9
0.58
1
69
41.1
Minor 5ss
42.3
-0.9
2.9
59.8
44.7
Minor BPS
48.3
-0
2
67.33
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028178
89534774 - 89538881
4108