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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89536012_89537216_R

Intron Information:

Intron Rank:
134118
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
89536012 - 89537216
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATCGTAAAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCCTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
56.7
0.15
1.1
53.9
43.6
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
62.5
0.47
1.6
78.06
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035571
89535940 - 89538881
2942