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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89644560_89645886_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89644560 - 89645886
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTCCTTACAG
Flanking Amino Acid:
EDYINANYVNMEIPSVGIVN
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.8
0.9
0.6
84.3
23.7
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
62.1
0.24
1.8
68.4
44.9

Associated Gene:

Gene:
PTPN3
Ensembl Gene ID:
ENSAPLG00000009931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010393
89625568 - 89750612
125045
ENSAPLT00000043217
89624568 - 89783015
158448