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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89646301_89648993_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89646301 - 89648993
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAATT
Flanking Amino Acid:
ESGTVLIQFEQLYRKKPGLA
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
64.5
0.53
1.6
80
36.6

Associated Gene:

Gene:
PTPN3
Ensembl Gene ID:
ENSAPLG00000009931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043217
89624568 - 89783015
158448
ENSAPLT00000010393
89625568 - 89750612
125045