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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89681443_89685100_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89681443 - 89685100
Intron Length:
3658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTCC
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTAGTATTT
Flanking Amino Acid:
RKLICTSFYPWVNILKISFK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.9
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
41
-1
2.8
50.5
41.2
Minor BPS
44.9
-0.3
2.3
69.58
41.7

Associated Gene:

Gene:
PTPN3
Ensembl Gene ID:
ENSAPLG00000009931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043217
89624568 - 89783015
158448
ENSAPLT00000010393
89625568 - 89750612
125045