Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89693641_89702376_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

89693641 - 89702376

Intron Length:

8736

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

TGTTTTCTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TGTTTTCTAACA

Flanking Amino Acid:

AVVLASYAVQSQLGDYNASV

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.1

74.4

36.1

Major BPS

73.8

0.59

1.3

72.8

Major PPT

81.5

0.71

0.9

77.7

35.5

Minor 5ss

-1.4

2.8

46.6

41.8

Minor BPS

64.8

0.46

1.6

76.34

34.4

Associated Gene:

Gene:

PTPN3

Ensembl Gene ID:

ENSAPLG00000009931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043217

89624568 - 89783015

158448

ENSAPLT00000010393

89625568 - 89750612

125045