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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89716251_89749973_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89716251 - 89749973
Intron Length:
33723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTGTTATTAAAT
Flanking Amino Acid:
AKHGDLTSHPGYSAIVMNSR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.7
34.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
39
-1.2
3.3
56.2
48
Minor BPS
57.8
0.32
1.7
73.83
42.9

Associated Gene:

Gene:
PTPN3
Ensembl Gene ID:
ENSAPLG00000009931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010393
89625568 - 89750612
125045