About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89716251_89782888_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89716251 - 89782888
Intron Length:
66638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTGTTATTAAAT
Flanking Amino Acid:
LLSCAYPQEKCYSAIVMNSR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
68.8
36.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
35
-1.7
3.3
44.3
43.6
Minor BPS
57.8
0.32
1.7
73.83
42.9

Associated Gene:

Gene:
PTPN3
Ensembl Gene ID:
ENSAPLG00000009931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043217
89624568 - 89783015
158448