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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89813237_89823397_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89813237 - 89823397
Intron Length:
10161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
EISIGALRFQTNFGVYLMNQ
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017617
89813090 - 90038684
225595