Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8981540_8982953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8981540 - 8982953

Intron Length:

1414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

TCTTTCCACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

TAACGTTTAATT

Flanking Amino Acid:

KHASPEDIKKAYRKLALKWH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.3

70.5

40.5

Major BPS

0.79

0.8

83.7

25.7

Major PPT

74.9

0.56

0.8

74.4

29.6

Minor 5ss

38.2

-1.3

3.3

48.1

41.4

Minor BPS

56.4

0.28

1.7

71.35

39.8

Associated Gene:

Gene:

DNAJB6

Ensembl Gene ID:

ENSAPLG00000005259

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031912

8981431 - 9021121

39691

ENSAPLT00000005470

8981431 - 9029266

47836