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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89818427_89820916_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
89818427 - 89820916
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCATTCCTCCGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTGAAAT
Flanking Amino Acid:
QSLSAARGRKTLRTCCSKLK
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.9
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
51.8
0.04
1.7
57.5
38.4
Minor 5ss
30.5
-2.2
2.5
33.4
41.8
Minor BPS
68
0.64
1.5
83.5
36.6

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010308
89818218 - 90038684
220467