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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89827608_89828210_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89827608 - 89828210
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATG
Flanking Amino Acid:
KNSMQHKNTKGPTCATSISL
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
74.7
0.56
0.8
73.5
36.8
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
58.1
0.12
1.6
64.77
37.5

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041350
89813058 - 90038684
225627
ENSAPLT00000017617
89813090 - 90038684
225595
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467