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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89828336_89832168_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89828336 - 89832168
Intron Length:
3833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTGTTAAGT
Flanking Amino Acid:
VICESKVCSHRVKTYDCGEK
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.8
0.51
1
70
35.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
57.2
0.31
2.3
81.49
40.5

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467
ENSAPLT00000041350
89813058 - 90038684
225627
ENSAPLT00000017617
89813090 - 90038684
225595