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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89838704_89845027_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89838704 - 89845027
Intron Length:
6324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTAAACC
Flanking Amino Acid:
YPIKSCSAFEVTEWPVGNQG
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
80.3
32.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.2
0.63
0.9
68.7
42
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
71.3
0.65
1.6
80.19
34.7

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467
ENSAPLT00000041350
89813058 - 90038684
225627
ENSAPLT00000017617
89813090 - 90038684
225595