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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89845475_89863124_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89845475 - 89863124
Intron Length:
17650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTATTTCAAACT
Flanking Amino Acid:
ENGEVIGFSQAGHVCGDDID
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
63.9
0.31
1
58
41.9
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
48
-0
2
68.42
42.9

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041350
89813058 - 90038684
225627