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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89863325_89911016_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89863325 - 89911016
Intron Length:
47692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTTTGTGCACT
Flanking Amino Acid:
HGFDVLEKLTGGMEKIKQHT
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84
30.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
37.3
-1.4
2.8
49.7
46.6
Minor BPS
45.8
-0.2
2.5
72.98
43.9

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017617
89813090 - 90038684
225595
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467
ENSAPLT00000041350
89813058 - 90038684
225627