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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89911094_89953309_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89911094 - 89953309
Intron Length:
42216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTG
Flanking Amino Acid:
FYFPKKSMAERFEDGTVSFL
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.5
0.82
0.7
84.6
30.3
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
49
-0.2
2
59.38
43.3

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467
ENSAPLT00000041350
89813058 - 90038684
225627
ENSAPLT00000017617
89813090 - 90038684
225595