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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_89953949_90007953_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
89953949 - 90007953
Intron Length:
54005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
TTTTCTTTCCTT
Flanking Amino Acid:
TYDTIEHVRYRILQHFGTTS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.2
34.4
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
35.2
-1.7
3.4
46.4
48.9
Minor BPS
46.1
-0.2
3.6
82.98
39.3

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041350
89813058 - 90038684
225627
ENSAPLT00000017617
89813090 - 90038684
225595
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467