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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8997519_8999037_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8997519 - 8999037
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
GTGCTCTGAAAT
Flanking Amino Acid:
IVNGKKITTKRIFENGQERV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
80.8
0.69
0.9
73.7
36.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
52.8
0.17
1.6
68.49
41.6

Associated Gene:

Gene:
DNAJB6
Ensembl Gene ID:
ENSAPLG00000005259
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031912
8981431 - 9021121
39691
ENSAPLT00000005470
8981431 - 9029266
47836