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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_8999109_9020807_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8999109 - 9020807
Intron Length:
21699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTTTCTTGCCT
Flanking Amino Acid:
DGQLRSLTINGEADEEAFAE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
52.8
0.17
3.5
90.53
33.5

Associated Gene:

Gene:
DNAJB6
Ensembl Gene ID:
ENSAPLG00000005259
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031912
8981431 - 9021121
39691
ENSAPLT00000005470
8981431 - 9029266
47836