About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90008021_90011069_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90008021 - 90011069
Intron Length:
3049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATGATTAACT
Flanking Amino Acid:
FTEDLRNNVYGNPHSQNISS
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
74
0.54
0.9
66.1
40.8
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
60
0.39
2
79.7
41.6

Associated Gene:

Gene:
MOCOS
Ensembl Gene ID:
ENSAPLG00000009898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017617
89813090 - 90038684
225595
ENSAPLT00000010313
89813058 - 90038684
225627
ENSAPLT00000010308
89818218 - 90038684
220467
ENSAPLT00000041350
89813058 - 90038684
225627