About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90052080_90088460_R

Intron Information:

Intron Rank:
139015
Intron Class:
major
Intron Phase:
Intron Coordinates:
90052080 - 90088460
Intron Length:
36381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
77.1
0.61
0.8
71.9
34
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022271
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021285
90051010 - 90088669
37660