Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90075714_90104667_F

Intron Information:

Intron Rank:

139040

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

90075714 - 90104667

Intron Length:

28954

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTTG

5'SS Class:

strong_major

3'SS Sequence:

CAAAATCATTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TTTTCCCCAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.8

79.5

36.8

Major BPS

71.6

0.54

33.1

Major PPT

56.4

0.15

52.1

42.1

Minor 5ss

40.3

-1.1

3.3

49.2

Minor BPS

58.9

0.28

78.36

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027743

90075492 - 90106406

30915