Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90089125_90091203_F

Intron Information:

Intron Rank:

147298

Intron Class:

major

Intron Phase:

Intron Coordinates:

90089125 - 90091203

Intron Length:

2079

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGCATTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

TAATACTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

84.7

0.86

74.3

40.7

Major PPT

77.3

0.61

0.9

69.7

41.2

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

57.5

0.32

1.8

75.21

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029334

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036114

90089030 - 90092625

3596