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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90248387_90252248_F

Intron Information:

Intron Rank:
136858
Intron Class:
major
Intron Phase:
Intron Coordinates:
90248387 - 90252248
Intron Length:
3862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTTCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.4
0.71
0.8
77
31.7
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
79
0.99
1.3
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023699
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030860
90248166 - 90262740
14575