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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90252321_90253674_F

Intron Information:

Intron Rank:
136859
Intron Class:
major
Intron Phase:
Intron Coordinates:
90252321 - 90253674
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATTGTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.3
0.68
0.8
73.1
37.2
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
48.4
-0
2.4
71.66
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023699
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030860
90248166 - 90262740
14575