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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90666683_90668549_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90666683 - 90668549
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGCTTCTCAACA
Flanking Amino Acid:
DREIGEIDEQIECYRRVELL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.3
0.55
0.9
69.8
35.4
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
65.4
0.48
1.5
72
40

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008866
90665978 - 90676996
11019
ENSAPLT00000033928
90665614 - 90676938
11325
ENSAPLT00000027212
90665978 - 90676938
10961