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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90668627_90670062_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90668627 - 90670062
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTCTCTTAGAGC
Flanking Amino Acid:
FQKAIRQVNTISEAIVAEED
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
84.5
0.78
0.8
85.1
29.7
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
49.4
-0
2
64.72
42

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027212
90665978 - 90676938
10961
ENSAPLT00000008866
90665978 - 90676996
11019
ENSAPLT00000033928
90665614 - 90676938
11325