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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90670144_90672725_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90670144 - 90672725
Intron Length:
2582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAATCATTAACG
Flanking Amino Acid:
FFDDPEVDAKVRKVDAPKDQ
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.6
0.64
0.8
77.4
31.1
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
68.9
0.46
1.7
71.36
40.7

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033928
90665614 - 90676938
11325
ENSAPLT00000027212
90665978 - 90676938
10961
ENSAPLT00000008866
90665978 - 90676996
11019