About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90674100_90675403_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90674100 - 90675403
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTACTCTTCACT
Flanking Amino Acid:
TEDKPHTSTSGLPADFFDET
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
69.3
0.43
0.9
63.4
37.8
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
58.4
0.35
1.8
74.9
41.4

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033928
90665614 - 90676938
11325
ENSAPLT00000027212
90665978 - 90676938
10961
ENSAPLT00000008866
90665978 - 90676996
11019