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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90675438_90676005_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90675438 - 90676005
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
GGCCGTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
TAAGACGTGACT
Flanking Amino Acid:
TENAELKRAKGTEDKPHTST
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
64.6
0.33
1
56.8
42.6
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
45.6
-0.2
2.3
65.71
44.6

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033928
90665614 - 90676938
11325
ENSAPLT00000027212
90665978 - 90676938
10961
ENSAPLT00000008866
90665978 - 90676996
11019