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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90676127_90676560_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90676127 - 90676560
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
TATTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TATTTCTTTACA
Flanking Amino Acid:
THVLGRQHREKVAELKGTKQ
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.7
0.89
0.7
84.3
30.3
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
71.8
0.68
1.5
80.05
35.9

Associated Gene:

Gene:
ZNF830
Ensembl Gene ID:
ENSAPLG00000008531
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033928
90665614 - 90676938
11325
ENSAPLT00000027212
90665978 - 90676938
10961
ENSAPLT00000008866
90665978 - 90676996
11019