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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90680882_90683305_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90680882 - 90683305
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCCCTGCTAACA
Flanking Amino Acid:
KKKGLVKRVQAFLAQCDTIE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
85
0.79
0.8
83.8
31.2
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
44.2
-0.4
2.3
56.54
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017349
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025428
90680792 - 90685298
4507