About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90691976_90692060_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90691976 - 90692060
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTAAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTCTTTAAAA
Flanking Amino Acid:
PVPFQKLIYKDVLMLITVIN
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
61.8
0.27
1.2
64.7
39.7
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
71.4
0.67
1.3
74.95
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018670
90691644 - 90695985
4342