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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90696531_90697009_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90696531 - 90697009
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GAATTGTTAACC
Flanking Amino Acid:
EGTPVDTKNKDGVLVDEFGL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.5
0.87
0.6
83.5
25
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
55.1
0.14
2.1
64.96
40.2

Associated Gene:

Gene:
CHMP5
Ensembl Gene ID:
ENSAPLG00000008151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008481
90696480 - 90703846
7367