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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90697566_90698579_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90697566 - 90698579
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACCAGTTGAAAT
Flanking Amino Acid:
YKQVKIDQIEDIQDQLEDMM
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77
0.61
1
73.6
41.8
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
42.3
-0.5
1.9
52.78
42.2

Associated Gene:

Gene:
CHMP5
Ensembl Gene ID:
ENSAPLG00000008151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008481
90696480 - 90703846
7367