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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90698652_90698731_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
90698652 - 90698731
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACCAGGA
5'SS Class:
weak_major
3'SS Sequence:
CACTCTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTCACTCTATT
Flanking Amino Acid:
IQALKDTKTTVDAMKLGVKE
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
48.5
42.5
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
71
0.47
0.9
62.4
38.1
Minor 5ss
34.8
-1.7
3.6
46.7
48.6
Minor BPS
48.8
-0
2
75.25
41

Associated Gene:

Gene:
CHMP5
Ensembl Gene ID:
ENSAPLG00000008151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008481
90696480 - 90703846
7367