About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90698826_90699642_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90698826 - 90699642
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
KALRVLKQKRMYEQQRDNLS
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
CHMP5
Ensembl Gene ID:
ENSAPLG00000008151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008481
90696480 - 90703846
7367