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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90699690_90700503_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90699690 - 90700503
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACC
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCTAAGAT
Flanking Amino Acid:
MKKMREGPAKNTVKQKALRV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.5
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
40.3
-1.1
2.9
53.5
43.3
Minor BPS
61.3
0.43
2
85.4
40.8

Associated Gene:

Gene:
CHMP5
Ensembl Gene ID:
ENSAPLG00000008151
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008481
90696480 - 90703846
7367