Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90700609_90703777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90700609 - 90703777

Intron Length:

3169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTCAGGGAG

5'SS Class:

major

3'SS Sequence:

TCGTCTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TCGTCTCTTACA

Flanking Amino Acid:

PPSLTDCIGTVDSRAESIDK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.4

55.2

43.9

Major BPS

70.8

0.52

70.6

31.6

Major PPT

82.2

0.72

0.8

76.1

32.6

Minor 5ss

24.5

-2.9

3.2

Minor BPS

49.5

-0

63.53

42.9

Associated Gene:

Gene:

CHMP5

Ensembl Gene ID:

ENSAPLG00000008151

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008481

90696480 - 90703846

7367