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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90705305_90706637_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90705305 - 90706637
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATGTAATAATT
Flanking Amino Acid:
FELNVFKPMMIKNVLNSARL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
80
0.75
1
78.6
31
Major PPT
72.1
0.5
1
73
37.3
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
46.7
-0.1
1.9
65.36
39.1

Associated Gene:

Gene:
FH
Ensembl Gene ID:
ENSAPLG00000007736
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036020
90704284 - 90719023
14740
ENSAPLT00000034711
90704284 - 90721099
16816
ENSAPLT00000008043
90704284 - 90719932
15649