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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90708268_90710106_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90708268 - 90710106
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
ACCCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GGTTTCATATTT
Flanking Amino Acid:
KVAAKVAELTGLPFVTAPNK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.1
39.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.6
0.49
0.8
65.8
29.5
Minor 5ss
29
-2.4
3.1
32.8
41.8
Minor BPS
49.7
0.05
1.9
70.14
40.8

Associated Gene:

Gene:
FH
Ensembl Gene ID:
ENSAPLG00000007736
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036020
90704284 - 90719023
14740
ENSAPLT00000034711
90704284 - 90721099
16816
ENSAPLT00000008043
90704284 - 90719932
15649