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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90712603_90714883_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90712603 - 90714883
Intron Length:
2281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
ANAIVKAADEVAQGKLNDHF
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.7
0.78
0.8
80.3
31.8
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
FH
Ensembl Gene ID:
ENSAPLG00000007736
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036020
90704284 - 90719023
14740
ENSAPLT00000034711
90704284 - 90721099
16816
ENSAPLT00000008043
90704284 - 90719932
15649