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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90715911_90720577_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90715911 - 90720577
Intron Length:
4667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGTATTTTAAAT
Flanking Amino Acid:
RWGPPPRAAMSTQESFRIEY
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.3
0.91
0.6
86.8
24.1
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
59
0.36
1.4
71.32
39.1

Associated Gene:

Gene:
FH
Ensembl Gene ID:
ENSAPLG00000007736
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034711
90704284 - 90721099
16816